Highlighted Publications

Knowledge Network Embedding of Transcriptomic Data from Spaceflown Mice Uncovers Signs and Symptoms Associated with Terrestrial Diseases

Charlotte A. Nelson, Ana Uriarte Acuna, Amber M. Paul, Ryan T. Scott, Atul J. Butte, Egle Cekanaviciute, Sergio E. Baranzini, Sylvain V. Costes. Life 12 Jan 2021.

Mechanical Ventilation Stimulates Expression of the SARS-Cov-2 Receptor ACE2 in the Lung and May Trigger a Vicious Cycle

Sui Huang, Arja Kaipainen, Michael Strasser, Sergio Baranzini. Preprints Online: 26 May 2020.

Integrating biomedical research and electronic health records to create knowledge-based biologically meaningful machine-readable embeddings

Charlotte A Nelson, Atul J Butte, Sergio E Baranzini. Nat Commun 2019 Jul 10.

Systematic integration of biomedical knowledge prioritizes drugs for repurposing

Daniel Scott Himmelstein, Antoine Lizee, Christine Hessler, Leo Brueggeman, Sabrina L Chen, Dexter Hadley, Ari Green, Pouya Khankhanian, Sergio E Baranzini. Elife 2017 Sep 22.

iCTNet2: integrating heterogeneous biological interactions to understand complex traits

Lili Wang, Daniel S Himmelstein, Adam Santaniello, Mousavi Parvin, Sergio E Baranzini. F1000Res 2015 Aug 5.

Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes

Daniel S Himmelstein, Sergio E Baranzini. PLoS Comput Biol 2015 Jul 9.